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Bioinformatics

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MCP-Server für Bioinformatik-Daten — Gene, Proteine, PubMed-Literatur, Varianten und Sequenzen via NCBI & UniProt

AiAgentKarlby AiAgentKarl
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About

MCP-Server für Bioinformatik-Daten — Gene, Proteine, PubMed-Literatur, Varianten und Sequenzen via NCBI & UniProt

README

Bioinformatics and life science data for AI agents — gene search, protein structures, clinical variants, PubMed literature, and DNA sequences via NCBI and UniProt.

PyPI version License: MIT

No API key required. 10 tools covering 6 data sources (NCBI Gene, ClinVar, Taxonomy, PubMed, Sequences, UniProt).

Quick Start

pip install bioinformatics-mcp-server

{
  "mcpServers": {
    "bioinformatics": {
      "command": "uvx",
      "args": ["bioinformatics-mcp-server"]
    }
  }
}

What Can You Do?

Ask your AI agent things like:

  • "Search for genes related to breast cancer"
  • "What clinical variants are known for BRCA1?"
  • "Find recent PubMed papers about CRISPR gene editing"
  • "Get the protein structure of human insulin from UniProt"
  • "What species does this organism belong to?"

10 Tools

NCBI (5 tools)

Tool What it does
search_genes Search genes by symbol, name, or function
get_gene_details Full gene info by NCBI Gene ID
search_clinvar_variants Clinical variants and mutations
get_taxonomy Taxonomic classification of organisms
get_ncbi_sequence DNA/protein sequences (FASTA/GenBank)

UniProt (2 tools)

Tool What it does
search_proteins Search proteins by name, gene, or organism
get_protein_details Protein details by UniProt accession

PubMed (3 tools)

Tool What it does
search_pubmed Search biomedical literature
get_pubmed_abstract Full abstract of a PubMed article
get_pubmed_citations Articles citing a specific publication

Related Servers

License

MIT

from github.com/AiAgentKarl/bioinformatics-mcp-server

Install Bioinformatics in Claude Desktop, Claude Code & Cursor

Recommended · one command, every IDE
unyly install bioinformatics

Installs into Claude Desktop, Claude Code, Cursor & VS Code — handles npx, uvx and build-from-source repos for you.

First time? Get the CLI: curl -fsSL https://unyly.org/install | sh

Or configure manually

Run in your terminal:

claude mcp add bioinformatics -- uvx bioinformatics-mcp-server

Step-by-step: how to install Bioinformatics

Install Bioinformatics in Claude DesktopInstall Bioinformatics in Claude CodeInstall Bioinformatics in CursorInstall Bioinformatics in VS Code

FAQ

Is Bioinformatics MCP free?

Yes, Bioinformatics MCP is free — one-click install via Unyly at no cost.

Does Bioinformatics need an API key?

No, Bioinformatics runs without API keys or environment variables.

Is Bioinformatics hosted or self-hosted?

Self-hosted: the server runs locally on your machine via the install command above.

How do I install Bioinformatics in Claude Desktop, Claude Code or Cursor?

Open Bioinformatics on unyly.org, pick your client tab (Claude Desktop, Claude Code, Cursor) and press Install — the config is generated automatically, no JSON editing.

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