Electron Microscopy Data Bank

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Cryo-EM density maps and structural metadata from the global Electron Microscopy Data Bank.

автор: pipeworx-io

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Описание

Cryo-EM density maps and structural metadata from the global Electron Microscopy Data Bank.

README

EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.

Part of Pipeworx — an MCP gateway connecting AI agents to 1394+ live data sources.

Tools

Tool	Description
`search_maps`	Search the EBI Electron Microscopy Data Bank (EMDB) for 3D cryo-EM / electron-tomography density maps by free-text keyword (e.g. "ribosome", "spike protein", "apoptosis"). Returns matching maps with EMDB id, title, resolution (Angstrom), and structure-determination method. Keyless. Complements PDB/AlphaFold (which hold atomic/experimental structures).
`get_map`	Get a single EMDB entry by its EMDB id (e.g. "EMD-1080"). Returns a trimmed record: title, sample, structure-determination method, resolution (Angstrom), and release date. EMDB holds 3D electron-microscopy density maps of proteins, complexes, and viruses. Keyless.

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "emdb": {
      "url": "https://gateway.pipeworx.io/emdb/mcp"
    }
  }
}

Or connect to the full Pipeworx gateway for access to all 1394+ data sources:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English:

ask_pipeworx({ question: "your question about Emdb data" })

The gateway picks the right tool and fills the arguments automatically.

License

MIT

from github.com/pipeworx-io/mcp-emdb

Установить Electron Microscopy Data Bank в Claude Desktop, Claude Code, Cursor

Рекомендуется · одна команда, все IDE

unyly install electron-microscopy-data-bank

Ставит в Claude Desktop, Claude Code, Cursor и VS Code — сам разбирается с npx, uvx и сборкой из исходников.

Впервые? Поставь CLI: curl -fsSL https://unyly.org/install | sh

Или настроить вручную

Выполни в терминале:

claude mcp add electron-microscopy-data-bank -- npx -y @pipeworx/mcp-emdb

Пошаговые гайды: как установить Electron Microscopy Data Bank

Установить Electron Microscopy Data Bank в Claude Desktop Установить Electron Microscopy Data Bank в Claude Code Установить Electron Microscopy Data Bank в Cursor Установить Electron Microscopy Data Bank в VS Code

FAQ