GraphHub

npx graphhub setup                                # auto-detect + install present clients
npx graphhub setup --force                        # install for all 5 clients regardless
npx graphhub setup --client claude-code,kilo-cli  # pick specific clients
npx graphhub setup --dry-run                      # preview what would be installed
npx graphhub setup --list                         # list all supported clients
npx graphhub uninstall-all                        # remove from all clients

git clone https://github.com/slnquangtran/Graph-Hub.git
cd Graph-Hub && npm install

npm run index -- /path/to/your/project
npm run setup -- /path/to/your/project

// Natural language → code
semantic_search({ query: "authentication validation", mode: "hybrid" })

// Exact or fuzzy symbol name
search_by_name({ name: "validateToken" })

// Results grouped by file
search_grouped({ query: "error handling middleware" })

// Cosine-similar symbols
find_similar({ name: "parseRequest", top_k: 5 })

// Explain which strategy was chosen
explain_search({ query: "jwt token refresh" })

// Callers + callees of a symbol
get_context({ name: "validateToken" })

// Full blast radius before you edit
impact_analysis({ name: "handleRequest" })

// Callers/callees for many symbols at once
batch_context({ names: ["validateToken", "handleRequest", "parseBody"] })

// Symbols in git-changed files + risk buckets
changed_symbols({ diff: "staged" })

// Raw Cypher for power users
query_graph({ cypher: "MATCH (s:Symbol)-[:CALLS]->(t) RETURN s.name, t.name LIMIT 20" })

// All symbols in a file
get_file_symbols({ path: "src/services/auth/token.ts" })

// RAG search + context + impact + next steps in one call
debug_trace({ query: "null pointer in auth middleware", top_k: 3 })

// Find functions/classes nobody calls — safe to delete?
find_dead_code({ kinds: ["function", "method"] })

// Find near-duplicate implementations (uses stored embeddings, no API cost)
find_duplicates({ name: "validateToken", min_similarity: 0.85, cross_file_only: true })

// Detect circular import chains and mutual-recursion call cycles
find_cycles({ type: "both", max_length: 3 })

// Save a learning
remember({ content: "Auth uses JWT with 15m TTL", type: "learning", project: "myapp" })

// Retrieve by similarity
recall({ query: "how does auth work?" })

// Chronological view
timeline({ limit: 20, project: "myapp" })

// Update or delete
update_observation({ id: "abc-123", content: "Updated: now uses refresh tokens" })
forget({ project: "myapp", type: "learning" })

// Linked to specific symbols
related_observations({ symbol: "validateToken" })

// Store a bug fix pattern
remember_bugfix({
  symptom: "TypeError: Cannot read property user of undefined",
  root_cause: "req.session was null on the /guest route",
  fix: "Added session guard at middleware entry",
})

// Recall by symptom similarity — even next week
recall_bugfix({ symptom: "undefined user property on guest route" })

// Cache which skill worked for a task
remember_skill_choice({
  task_description: "rename a function safely across the repo",
  skill_path: ".claude/skills/refactoring/SKILL.md",
  outcome: "success",
})

// Route future similar tasks to the same skill
recall_skill_choice({ task_description: "rename a symbol in multiple files" })

npx graphhub setup

Auto-detects and writes to each agent's global config — no per-project setup needed.

Existing keys are preserved — only the graphhub entry is added or updated. Use --force to install for agents that aren't yet present. A postinstall hook runs automatically after npm install graphhub; opt out with GRAPHHUB_NO_INSTALL=1, CI=1, or npm_config_global=true.

npm run install-claude

Adds PreToolUse/PostToolUse hooks and updates CLAUDE.md. The setup command above covers MCP config only.

{
  "mcpServers": {
    "graphhub": {
      "command": "npx",
      "args": ["tsx", "src/index.ts", "serve"],
      "cwd": "/path/to/graphhub"
    }
  }
}

• Session memory (remember / recall / forget)
• Always-on PreToolUse hooks
• PostToolUse auto-reindex
• Graph report generation
• Verified 85% token reduction
• Class hierarchy edges (INHERITS, IMPLEMENTS)
• One-shot debug_trace and bulk batch_context
• Pattern memory for bug fixes and skill routing
• One-command multi-client setup (Claude Code, OpenCode, Gemini CLI, Antigravity, Kilo CLI)
• Global install — writes to home-dir configs so all projects benefit without per-project setup
• .gitignore support (cross-platform, including Windows path normalization)
• Proper database lifecycle — close() releases the file lock on MCP server, watch mode, and CLI exit

• find_dead_code — Find functions, methods, and classes with zero callers. Common entry-point patterns (main, init, onX, handleX…) are filtered automatically; pass include_entry_points: true to see everything.
• find_duplicates — Find near-duplicate implementations of any symbol using stored cosine embeddings. No API cost — works offline. Supports min_similarity threshold and cross_file_only filter.
• find_cycles — Detect circular import chains and mutual-recursion call cycles up to length 3. Reports each cycle as an ordered list of file paths (import) or symbol names (call).
• 14 new tests — Full coverage of entry-point filtering, cycle detection, similarity threshold, and cross-file filtering.

• Global install — All adapters now write to home-dir global configs (~/.claude/, ~/.gemini/, etc.) so one npx graphhub setup --force covers every project without per-project setup
• Kilo CLI support — New adapter for Kilo CLI (~/.config/kilo/kilo.json)
• graphhubDir fix — npx graphhub setup now correctly resolves the package location from import.meta.url instead of process.cwd() (which pointed to the user's project, causing broken MCP server paths)
• Gemini CLI fix — Was writing to <project>/.gemini/ instead of ~/.gemini/; fixed to use home dir
• Windows path fix — MCP server entry paths now always use forward slashes in JSON configs

• DB lifecycle fix — MCP server, watch mode, and all CLI commands now properly release the KuzuDB file lock on exit
• .gitignore support — cross-platform path normalization (fixes Windows \ vs / mismatch)
• Python parser — upgraded to full Tree-sitter AST extraction (functions, classes, calls, inheritance)
• Import alias resolution — import { foo as bar } now stores foo as the specifier, fixing cross-file call graph edges
• Fuzzy symbol search — case-insensitive (toLower(s.name) CONTAINS query)
• forget() safety — requires at least one filter; no longer silently deletes all observations
• MCP get_file_symbols — fixed: was returning an empty object (raw DB cursor)
• Error resilience — per-file parse errors no longer abort the entire indexing run
• BigInt coercion — KuzuDB count() results coerced to Number; JSON.stringify no longer throws on stats