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Uniprot
FreeProvides access to UniProt protein sequence and function knowledge base, enabling search and retrieval of protein entries, proteomes, taxonomy, and feature anno
About
Provides access to UniProt protein sequence and function knowledge base, enabling search and retrieval of protein entries, proteomes, taxonomy, and feature annotations.
README
UniProt protein sequence + function knowledge-base (EBI)
Part of Pipeworx — an MCP gateway connecting AI agents to 250+ live data sources.
Tools
| Tool | Description |
|---|---|
search |
UniProtKB search (Lucene-style: "gene:BRCA1 AND organism_id:9606"). |
get |
Single UniProtKB entry by accession. |
proteomes_search |
Search reference proteomes. |
taxonomy_search |
Search NCBI taxonomy via UniProt. |
keyword |
UniProt keyword info (KW-####). |
feature_summary |
Feature annotation summary (DOMAIN, MUTAGEN, etc.) for an accession. |
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"uniprot": {
"url": "https://gateway.pipeworx.io/uniprot/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 250+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Uniprot data" })
The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
How to install
Run in your terminal:
claude mcp add mcp-uniprot -- npx 
