Expression Atlas

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Enables querying the EBI Expression Atlas for gene expression data across species and conditions. Part of the Pipeworx gateway, it provides access to baseline a

автор: pipeworx-io

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Описание

Enables querying the EBI Expression Atlas for gene expression data across species and conditions. Part of the Pipeworx gateway, it provides access to baseline and differential expression studies.

README

EBI Expression Atlas MCP.

Part of Pipeworx — an MCP gateway connecting AI agents to 815+ live data sources.

Tools

Tool	Description

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "expression-atlas": {
      "url": "https://gateway.pipeworx.io/expression-atlas/mcp"
    }
  }
}

Or connect to the full Pipeworx gateway for access to all 815+ data sources:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English:

ask_pipeworx({ question: "your question about Expression Atlas data" })

The gateway picks the right tool and fills the arguments automatically.

License

MIT

from github.com/pipeworx-io/mcp-expression-atlas

Установка Expression Atlas

У этого сервера нет опубликованного пакета — он собирается из исходников. Открой репозиторий и следуй инструкции в README.

▸ github.com/pipeworx-io/mcp-expression-atlas

FAQ