About
EBI BioSamples MCP.
README
EBI BioSamples MCP.
Part of Pipeworx — an MCP gateway connecting AI agents to 832+ live data sources.
Tools
| Tool | Description |
|---|
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"biosamples": {
"url": "https://gateway.pipeworx.io/biosamples/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 832+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Biosamples data" })
The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
Installing Biosamples
This server has no published package — it is built from source. Open the repository and follow its README.
▸ github.com/pipeworx-io/mcp-biosamplesFAQ
Is Biosamples MCP free?
Yes, Biosamples MCP is free — one-click install via Unyly at no cost.
Does Biosamples need an API key?
No, Biosamples runs without API keys or environment variables.
Is Biosamples hosted or self-hosted?
Self-hosted: the server runs locally on your machine via the install command above.
How do I install Biosamples in Claude Desktop, Claude Code or Cursor?
Open Biosamples on unyly.org, pick your client tab (Claude Desktop, Claude Code, Cursor) and press Install — the config is generated automatically, no JSON editing.
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