About
EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.
README
EMDB (EBI Electron Microscopy Data Bank) MCP — keyless.
Part of Pipeworx — an MCP gateway connecting AI agents to 836+ live data sources.
Tools
| Tool | Description |
|---|
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"emdb": {
"url": "https://gateway.pipeworx.io/emdb/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 836+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Emdb data" })
The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
Installing Emdb
This server has no published package — it is built from source. Open the repository and follow its README.
▸ github.com/pipeworx-io/mcp-emdbFAQ
Is Emdb MCP free?
Yes, Emdb MCP is free — one-click install via Unyly at no cost.
Does Emdb need an API key?
No, Emdb runs without API keys or environment variables.
Is Emdb hosted or self-hosted?
Self-hosted: the server runs locally on your machine via the install command above.
How do I install Emdb in Claude Desktop, Claude Code or Cursor?
Open Emdb on unyly.org, pick your client tab (Claude Desktop, Claude Code, Cursor) and press Install — the config is generated automatically, no JSON editing.
Related MCPs
GitHub
PRs, issues, code search, CI status
by GitHubFilesystem
Secure file operations with configurable access controls.
Memory
Knowledge graph-based persistent memory system.
Template MCP Server
A CLI tool to create a new Model Context Protocol server project with TypeScript support, dual transport options, and an extensible structure
by mcpdotdirectCompare Emdb with
Not sure what to pick?
Find your stack in 60 seconds
Author?
Embed badge for your README
Browse similar
All development MCPs